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Comprehensive public database providing researchers structural and functional genomic information on the model organism, Schizosaccharomyces pombe, in an elegant, user-friendly interface.  PomBase officially replaced GeneDB S. pombe in May, 2013.

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Pombase homepage

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Gene summary

PomBase servicesEdit

PomBase is made possible by the contibutions of the fission yeast research community
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Identified phenotypes

.  For any characterized gene, Pombase provides succinct, curated data including: gene sequence, splice variants, associated phenotypes, and protein sequence and structural information.

PomBase is funded by the Welcome Trust and is managed by a collaboration between the University of Cambridge, the European Bioinformatics Institute and University College London.

Example of primary research supported by PomBaseEdit

Clayton, J. E., et al. (2010)."Differential regulation of unconventional fission yeast myosins via the actin track." Curr Biol 20(16): 1423-1431.

BACKGROUND: Fission yeast possesses three unconventional myosins: Myo1p (a class I myosin that functions at endocytic actin patches) and Myo51p and Myo52p (class V myosins that function at contractile rings and actin cables, respectively). Here we used a combination of in vivo and in vitro approaches to investigate how changes in the actin track influence the motor activity and spatial regulation of these myosins. RESULTS: We optimized the isolation of Myo1p, Myo51p, and Myo52p. All three myosins exhibited robust motor activity in ATPase and actin filament gliding assays. However, decoration of actin with tropomyosin differentially regulates the activity of these motors. Tropomyosin inhibits Myo1p by blocking its ability to form productive associations with actin filaments, whereas tropomyosin increases the actin affinity and ATPase activity of Myo51p and Myo52p. The actin filament crosslinking protein fimbrin rescues Myo1p motor activity by displacing tropomyosin from actin filaments. Consistent with our in
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Protein details

vitro findings, fimbrin and tropomyosin have opposing effects on Myo1p function at actin patches. Defects in tropomyosin function led to shorter Myo1p patch lifetimes, whereas loss of fimbrin extended Myo1p lifetimes. Furthermore, defects in tropomyosin function decreased the efficiency of Myo52p-directed motility along actin cables in the cell. CONCLUSION: Tropomyosin promotes myosin-V motility along actin cables. Accumulation of fimbrin at actin patches relieves Myo1p from tropomyosin-mediated inhibition, ensuring maximal myosin-I motor activity at these sites. Thus, spatial regulation of myosin motor function is in part controlled by specific changes in the composition of the actin track.

PomBase was a valuable tool used during this research project -- from designing primers based on the published gene sequences, to evaluating observed phenotypes based on previously published findings.